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Publications

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Explore the publication histories of researchers at our nonprofit initiative. Papers retain their original authorship and affiliations, with prior work distinguished from BILSER outputs.

Showing 44 of 44 publications

Researcher prior work

A plasmid-mediated type III secretion system associated with invasiveness and diarrheagenicity of Providencia rustigianii

Jayedul Hassan, Atsushi Hinenoya, Noritoshi Hatanaka, Sharda Prasad Awasthi, Goutham Belagula Manjunath, Nahid Rahman, Jyoji Yamate, Shota Nakamura, Daisuke Motooka, Akira Nagita, Shah M. Faruque, Shinji Yamasaki

mBio · 2024

Researcher prior work

Environmental prevalence of toxigenic Vibrio cholerae O1 in Bangladesh coincides with V. cholerae non-O1 non-O139 genetic variants which overproduce autoinducer-2

Iftekhar Bin Naser, Tushar Ahmed Shishir, Shah Nayeem Faruque, M. Mozammel Hoque, Anamul Hasan, Shah M. Faruque

PLOS ONE · 2021

Researcher prior work

Crude preparation of a phage-encoded biofilm-dispersing factor expressed in E. coli and its potential application in bacteriological analysis of environmental water samples

Shah Nayeem Faruque, Iftekhar Bin Naser, M. Mozammel Hoque, Fariya Akter, Shah M. Faruque

Applied and Environmental Microbiology · 2025

Researcher prior work

Vibrio cholerae strains with inactivated cqsS gene overproduce autoinducer-2 which enhances resuscitation of dormant environmental V. cholerae

Iftekhar Bin Naser, M. Mozammel Hoque, Shah Nayeem Faruque, M. Kamruzzaman, Shinji Yamasaki, Shah M. Faruque

PLOS ONE · 2019

Researcher prior work

Wild raccoons (Procyon lotor) as a potential reservoir of cytolethal distending toxin-producing Providencia strains in Japan

Okechukwu John Obi, Atsushi Hinenoya, Sharda Prasad Awasthi, Noritoshi Hatanaka, Shah M. Faruque, Shinji Yamasaki

Microbiology Spectrum · 2025

Researcher prior work

Presence of Functionally Active Cytolethal Distending Toxin Genes on a Conjugative Plasmid in a Clinical Isolate of Providencia rustigianii

Jayedul Hassan, Sharda Prasad Awasthi, Noritoshi Hatanaka, Phuong Hoai Hoang, Akira Nagita, Atsushi Hinenoya, Shah M. Faruque, Shinji Yamasaki

Infection and Immunity · 2023

Researcher prior workReviewed

Faecal contamination of commuters’ hands in main vehicle stations in Dhaka city, Bangladesh

Mohammad S. Islam, Zahid H. Mahmud, Mohammad S. Islam, Rokon U. Zaman, Mohammad R. Islam, Partha S. Gope, Khairul Islam, Hasin Jahan, Aftab Opel, Ganesh C. Shaha, Shah M. Faruque, John D. Clemens

Transactions of The Royal Society of Tropical Medicine and Hygiene · 2016

Researcher prior workReviewed

Suppression of Virulence of Toxigenic Vibrio cholerae by Anethole through the Cyclic AMP (cAMP)-cAMP Receptor Protein Signaling System

M. Shamim Hasan Zahid, Sharda Prasad Awasthi, Masahiro Asakura, Shruti Chatterjee, Atsushi Hinenoya, Shah M. Faruque, Shinji Yamasaki

PLOS ONE · 2015

Researcher prior workReviewed

Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri

Thomas R Connor, Clare R Barker, Kate S Baker, François-Xavier Weill, Kaisar Ali Talukder, Anthony M Smith, Stephen Baker, Malika Gouali, Duy Pham Thanh, Ishrat Jahan Azmi, Wanderley Dias da Silveira, Torsten Semmler, Lothar H Wieler, Claire Jenkins, Alejandro Cravioto, Shah M Faruque, Julian Parkhill, Dong Wook Kim, Karen H Keddy, Nicholas R Thomson

eLife · 2015

Researcher prior workReviewed

Fluoroquinolone Resistance Mechanisms of Shigella flexneri Isolated in Bangladesh

Ishrat J. Azmi, Bijay K. Khajanchi, Fatema Akter, Trisheeta N. Hasan, Mohammad Shahnaij, Mahmuda Akter, Atanu Banik, Halima Sultana, Mohammad A. Hossain, Mohammad K. Ahmed, Shah M. Faruque, Kaisar A. Talukder

PLoS ONE · 2014

Researcher prior workReviewed

In silico comparative genomics of SARS-CoV-2 to determine the source and diversity of the pathogen in Bangladesh

Tushar Ahmed Shishir, Iftekhar Bin Naser, Shah M. Faruque

PLOS ONE · 2021

Researcher prior workReviewed

Environmental Spread of New Delhi Metallo-β-Lactamase-1-Producing Multidrug-Resistant Bacteria in Dhaka, Bangladesh

Mohammad Aminul Islam, Moydul Islam, Rashedul Hasan, M. Iqbal Hossain, Ashikun Nabi, Mahdia Rahman, Wil H. F. Goessens, Hubert P. Endtz, Alexandria B. Boehm, Shah M. Faruque

Applied and Environmental Microbiology · 2017

Researcher prior workReviewed

Safe distances between groundwater-based water wells and pit latrines at different hydrogeological conditions in the Ganges Atrai floodplains of Bangladesh

M. Sirajul Islam, Zahid Hayat Mahmud, M. Shafiqul Islam, Ganesh Chandra Saha, Anwar Zahid, AHM Zulfiquar Ali, M. Qumrul Hassan, Khairul Islam, Hasin Jahan, Yakub Hossain, M. Masud Hasan, Sandy Cairncross, Richard Carter, Stephen P. Luby, Alejandro Cravioto, Hubert Ph. Endtz, Shah M. Faruque, John D. Clemens

Journal of Health, Population and Nutrition · 2016

Researcher prior workReviewed

Prevalence, Serovar, and Antimicrobial Resistance of Nontyphoidal Salmonella in Vegetable, Fruit, and Water Samples in Ho Chi Minh City, Vietnam

Dao Thi Anh Nguyen, Sharda Prasad Awasthi, Phuong Hoai Hoang, Phuc Do Nguyen, Hassan Jayedul, Noritoshi Hatanaka, Atsushi Hinenoya, Chinh Van Dang, Shah M. Faruque, Shinji Yamasaki

Foodborne Pathogens and Disease · 2021

Researcher prior workReviewed

Environmental bacteriophages active on biofilms and planktonic forms of toxigenic Vibrio cholerae: Potential relevance in cholera epidemiology

Iftekhar Bin Naser, M. Mozammel Hoque, Ahmed Abdullah, S. M. Nayeemul Bari, Amar N. Ghosh, Shah M. Faruque

PLOS ONE · 2017

Researcher prior workReviewed

RS1 Satellite Phage Promotes Diversity of Toxigenic Vibrio cholerae by Driving CTX Prophage Loss and Elimination of Lysogenic Immunity

M. Kamruzzaman, William Paul Robins, S. M. Nayeemul Bari, Shamsun Nahar, John J. Mekalanos, Shah M. Faruque

Infection and Immunity · 2014

Researcher prior workReviewed

Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study

Kate S Baker, Timothy J Dallman, Philip M Ashton, Martin Day, Gwenda Hughes, Paul D Crook, Victoria L Gilbart, Sandra Zittermann, Vanessa G Allen, Benjamin P Howden, Takehiro Tomita, Mary Valcanis, Simon R Harris, Thomas R Connor, Vitali Sintchenko, Peter Howard, Jeremy D Brown, Nicola K Petty, Malika Gouali, Duy Pham Thanh, Karen H Keddy, Anthony M Smith, Kaisar A Talukder, Shah M Faruque, Julian Parkhill, Stephen Baker, François-Xavier Weill, Claire Jenkins, Nicholas R Thomson

The Lancet Infectious Diseases · 2015

Researcher prior workReviewed

Quorum regulated latent environmental cells of toxigenic Vibrio cholerae and their role in cholera outbreaks

Shah Nayeem Faruque, Shinji Yamasaki, Shah M. Faruque

Gut Pathogens · 2024

Researcher prior workReviewed

Toxigenic properties and stx phage characterization of Escherichia coli O157 isolated from animal sources in a developing country setting

Mahdia Rahman, Ashikun Nabi, Md Asadulghani, Shah M. Faruque, Mohammad Aminul Islam

BMC Microbiology · 2018

Researcher prior workReviewed

Analysis of the CRISPR-Cas system in bacteriophages active on epidemic strains of Vibrio cholerae in Bangladesh

Iftekhar Bin Naser, M. Mozammel Hoque, M. Ausrafuggaman Nahid, Tokee M. Tareq, M. Kamruzzaman Rocky, Shah M. Faruque

Scientific Reports · 2017

Researcher prior workReviewed

Quorum Regulated Resistance of Vibrio cholerae against Environmental Bacteriophages

M. Mozammel Hoque, Iftekhar Bin Naser, S. M. Nayeemul Bari, Jun Zhu, John J. Mekalanos, Shah M. Faruque

Scientific Reports · 2016

Researcher prior workReviewed

Genetic diversity and antibiotic resistance in Escherichia coli from environmental surface water in Dhaka City, Bangladesh

M. Kamruzzaman, Shereen Shoma, S.M. Naymul Bari, Andrew N. Ginn, Agnieszka M. Wiklendt, Sally R. Partridge, Shah M. Faruque, Jonathan R. Iredell

Diagnostic Microbiology and Infectious Disease · 2013

Researcher prior workReviewed

Emergence and evolution of Vibrio cholerae O139

Shah M. Faruque, David A. Sack, R. Bradley Sack, Rita R. Colwell, Yoshifumi Takeda, G. Balakrish Nair

Proceedings of the National Academy of Sciences · 2003

Researcher prior workReviewed

Acquisition of classical CTX prophage from Vibrio cholerae O141 by El Tor strains aided by lytic phages and chitin-induced competence

S. M. Nashir Udden, M. Shamim Hasan Zahid, Kuntal Biswas, Qazi Shafi Ahmad, Alejandro Cravioto, G. Balakrish Nair, John J. Mekalanos, Shah M. Faruque

Proceedings of the National Academy of Sciences · 2008

Researcher prior workReviewed

Phase Variable O Antigen Biosynthetic Genes Control Expression of the Major Protective Antigen and Bacteriophage Receptor in Vibrio cholerae O1

Kimberley D. Seed, Shah M. Faruque, John J. Mekalanos, Stephen B. Calderwood, Firdausi Qadri, Andrew Camilli

PLoS Pathogens · 2012

Researcher prior workReviewed

Quorum-sensing autoinducers resuscitate dormant Vibrio cholerae in environmental water samples

S. M. Nayeemul Bari, M. Kamruzzaman Roky, M. Mohiuddin, M. Kamruzzaman, John J. Mekalanos, Shah M. Faruque

Proceedings of the National Academy of Sciences · 2013

Researcher prior workReviewed

Transmissibility of cholera: In vivo -formed biofilms and their relationship to infectivity and persistence in the environment

Shah M. Faruque, Kuntal Biswas, S. M. Nashir Udden, Qazi Shafi Ahmad, David A. Sack, G. Balakrish Nair, John J. Mekalanos

Proceedings of the National Academy of Sciences · 2006

Researcher prior workReviewed

Satellite phage TLCφ enables toxigenic conversion by CTX phage through dif site alteration

Faizule Hassan, M. Kamruzzaman, John J. Mekalanos, Shah M. Faruque

Nature · 2010

Researcher prior workReviewed

Genetic diversity and virulence potential of environmental Vibrio cholerae population in a cholera-endemic area

Shah M. Faruque, Nityananda Chowdhury, M. Kamruzzaman, Michelle Dziejman, M. Hasibur Rahman, David A. Sack, G. Balakrish Nair, John J. Mekalanos

Proceedings of the National Academy of Sciences · 2004

Researcher prior workReviewed

Self-limiting nature of seasonal cholera epidemics: Role of host-mediated amplification of phage

Shah M. Faruque, M. Johirul Islam, Qazi Shafi Ahmad, A. S. G. Faruque, David A. Sack, G. Balakrish Nair, John J. Mekalanos

Proceedings of the National Academy of Sciences · 2005

Researcher prior workReviewed

Modeling the role of bacteriophage in the control of cholera outbreaks

Mark A. Jensen, Shah M. Faruque, John J. Mekalanos, Bruce R. Levin

Proceedings of the National Academy of Sciences · 2006

Researcher prior workReviewed

Seasonal epidemics of cholera inversely correlate with the prevalence of environmental cholera phages

Shah M. Faruque, Iftekhar Bin Naser, M. Johirul Islam, A. S. G. Faruque, A. N. Ghosh, G. Balakrish Nair, David A. Sack, John J. Mekalanos

Proceedings of the National Academy of Sciences · 2005

Researcher prior workReviewed

An inducible lambdoid prophage encoding cytolethal distending toxin (Cdt-I) and a type III effector protein in enteropathogenic Escherichia coli

Masahiro Asakura, Atsushi Hinenoya, Mohammad S. Alam, Kensuke Shima, Shamim Hasan Zahid, Lei Shi, Norihiko Sugimoto, A. N. Ghosh, T. Ramamurthy, Shah M. Faruque, G. Balakrish Nair, Shinji Yamasaki

Proceedings of the National Academy of Sciences · 2007

Researcher prior workReviewed

A 4‐Year Study of the Epidemiology ofVibrio choleraein Four Rural Areas of Bangladesh

R. Bradley Sack, A. Kasem Siddique, Ira M. Longini, Jr., Azhar Nizam, Md. Yunus, M. Sirajul Islam, J. Glenn Morris, Jr., Afsar Ali, Anwar Huq, G. Balakrish Nair, Firdausi Qadri, Shah M. Faruque, David A. Sack, Rita R. Colwell

The Journal of Infectious Diseases · 2003

Researcher prior workReviewed

Seasonal Cholera from Multiple Small Outbreaks, Rural Bangladesh

O. Colin Stine, Munirul Alam, Li Tang, G. Balakrish Nair, A. Kasem Siddique, Shah M. Faruque, Anwar Huq, Rita Colwell, R. Bradley Sack, J. Glenn Morris

Emerging Infectious Diseases · 2008

Researcher prior workReviewed

Quorum-regulated biofilms enhance the development of conditionally viable, environmental Vibrio cholerae

M. Kamruzzaman, S. M. Nashir Udden, D. Ewen Cameron, Stephen B. Calderwood, G. Balakrish Nair, John J. Mekalanos, Shah M. Faruque

Proceedings of the National Academy of Sciences · 2010

Researcher prior workReviewed

Large outbreak of clinical cholera due to Vibrio cholerae non-01 in Bangladesh

M. John Albert, A.K. Siddique, M.S. Islam, A.S.G. Faruque, M. Ansaruzzaman, S.M. Faruque, R. Bradley Sack

The Lancet · 1993

Researcher prior workReviewed

Epidemiology, Genetics, and Ecology of Toxigenic Vibrio cholerae

Shah M. Faruque, M. John Albert, John J. Mekalanos

Microbiology and Molecular Biology Reviews · 1998

Researcher prior workReviewed

Large epidemic of cholera-like disease in Bangladesh caused by Vibrio cholerae 0139 synonym Bengal

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The Lancet · 1993

Researcher prior workReviewed

Study on the identification and quantification of sodium benzoate in different brands of jelly by high performance liquid chromatography

M.A. Zubair, A. Kundu, M. Esrafil, S. Akter, L. Bari, M.A. Sikder, N. Akter

Food Research · 2023

Researcher prior workReviewed

Rapid High-Performance Liquide Chromatographic Method for Quantitative Determination of Caffeine in Different Soft and Energy Drinks Available in Bangladesh

Juthi Mirza, Masuda Sultana, Md. Esrafil, Shamoli Akter, Md. Jahangir Alam, Md. Shahinul Haque Khan, Md. Abu Zubair

Current Research in Nutrition and Food Science Journal · 2021

Researcher prior workReviewed

Development and quality evaluation of novel biscuits by utilizing fruits and vegetables seed

M. Esrafil, S. Akter, M.J. Alam, M.A. Alim, M.S.A. Reza, M.A. Zubair, P.R. Joy, M. Jahan, M. Khatun

Food Research · 2024

Researcher prior workReviewed

Determination of sodium benzoate in different brands of orange juices available in Bangladesh by high-performance liquid chromatography

A. Shaha, M. Esrafil, S. Akter, L. Bari, M.S.H. Khan, M.J. Alam, P.R. Dina, M.A. Zubair

Food Research · 2024

Researcher prior workReviewed

Nutritional and Functional Evaluation of Winged Yam (Dioscorea alata) Composite Biscuits for Health-Promoting Diets

Jakia Sultana Erin, Hena Akter Runa, Md. Tamim Hassan, Md. Esrafil, Luthfunnesa Bari, Md. Sajib Al Reza, Md. Abu Zubair, Md. Zainul Abedin

Health Dynamics · 2026